2N40 Cell Adhesion date Jun 16, 2015
title Solution Structure Of The Link Module Of Human Tsg-6 In Pres Chondroitin 4-Sulfate Hexasaccharide
authors Y.Park, J.H.Prestegard
compound source
Molecule: Tumor Necrosis Factor-Inducible Gene 6 Protein
Chain: A
Fragment: Link Module Of Tsg-6, Unp Residues 36-133
Synonym: Hyaluronate-Binding Protein, Tnf-Stimulated Gene 6 Tsg-6, Tumor Necrosis Factor Alpha-Induced Protein 6, Tnf A Induced Protein 6;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfaip6, Tsg6
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prk172
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNuclear Magnetic Resonance Insight into the Multiple Glycosaminoglycan Binding Modes of the Link Module from Human TSG-6., Park Y, Jowitt TA, Day AJ, Prestegard JH, Biochemistry. 2016 Jan 6. PMID:26685054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (498 Kb) [Save to disk]
  • Biological Unit Coordinates (2n40.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2N40
  • Original NMR restraints for 2N40 from PDB
  • Retrieve 2N40 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N40 from S2C, [Save to disk]
    • View 2N40 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2N40
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n40] [2n40_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N40: [LINK ] by SMART
    • Other resources with information on 2N40
  • Community annotation for 2N40 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science