2N80 Signaling Protein date Sep 30, 2015
title P75ntr Dd:Rhogdi
authors Z.Lin, C.F.Ibanez
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Unp Residues 334-427
Synonym: Gp80-Lngfr, Low Affinity Neurotrophin Receptor P75 Affinity Nerve Growth Factor Receptor, Ngf Receptor, P75 Ic
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ngfr, Tnfrsf16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a-Derived

Molecule: Rho Gdp-Dissociation Inhibitor 1
Chain: B
Fragment: Unp Residues 31-204
Synonym: Rho Gdi 1, Rho-Gdi Alpha
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgdia, Gdia1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of death domain signaling in the p75 neurotrophin receptor., Lin Z, Tann JY, Goh ET, Kelly C, Lim KB, Gao JF, Ibanez CF, Elife. 2015 Dec 8;4. pii: e11692. doi: 10.7554/eLife.11692. PMID:26646181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (706 Kb) [Save to disk]
  • Biological Unit Coordinates (2n80.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 2N80
  • Original NMR restraints for 2N80 from PDB
  • Retrieve 2N80 in mmCIF format [Save to disk]
  • View 2N80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N80
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n80 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n80] [2n80_A] [2n80_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N80: [DEATH ] by SMART
  • Other resources with information on 2N80
  • Community annotation for 2N80 at PDBWiki (http://pdbwiki.org)

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