2N80 Signaling Protein date Sep 30, 2015
title P75ntr Dd:Rhogdi
authors Z.Lin, C.F.Ibanez
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Unp Residues 334-427
Synonym: Gp80-Lngfr, Low Affinity Neurotrophin Receptor P75 Affinity Nerve Growth Factor Receptor, Ngf Receptor, P75 Ic
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ngfr, Tnfrsf16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a-Derived

Molecule: Rho Gdp-Dissociation Inhibitor 1
Chain: B
Fragment: Unp Residues 31-204
Synonym: Rho Gdi 1, Rho-Gdi Alpha
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgdia, Gdia1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
methodSolution NMR
Primary referenceStructural basis of death domain signaling in the p75 neurotrophin receptor., Lin Z, Tann JY, Goh ET, Kelly C, Lim KB, Gao JF, Ibanez CF, Elife. 2015 Dec 8;4. pii: e11692. doi: 10.7554/eLife.11692. PMID:26646181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (706 Kb) [Save to disk]
  • Biological Unit Coordinates (2n80.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 2N80
  • Original NMR restraints for 2N80 from PDB
  • Retrieve 2N80 in mmCIF format [Save to disk]
  • View 2N80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N80
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n80 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n80] [2n80_A] [2n80_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N80: [DEATH ] by SMART
  • Other resources with information on 2N80
  • Community annotation for 2N80 at PDBWiki (http://pdbwiki.org)

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