2N82 Rna Binding Protein Rna date Sep 30, 2015
title Solution Structure Of The Complex Of Microrna 20b Pre-Elemen Rbfox Rrm
authors F.Yang, Y.Chen, G.Varani
compound source
Molecule: Rna (5'- R(Gpgpupapgpupupupupgpgpcpapupgpapcpupcp C)-3');
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna Binding Protein Fox-1 Homolog 1
Chain: B
Fragment: Unp Residues 109-208
Synonym: Ataxin-2-Binding Protein 1, Fox-1 Homolog A, Hexaribonucleotide-Binding Protein 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbfox1, A2bp, A2bp1, Fox1, Hrnbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceRbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer., Chen Y, Zubovic L, Yang F, Godin K, Pavelitz T, Castellanos J, Macchi P, Varani G, Nucleic Acids Res. 2016 Mar 21. pii: gkw177. PMID:27001519
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (806 Kb) [Save to disk]
  • Biological Unit Coordinates (2n82.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 2N82
  • Original NMR restraints for 2N82 from PDB
  • Retrieve 2N82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N82 from S2C, [Save to disk]
  • View 2N82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N82
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n82 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n82_B] [2n82_A] [2n82]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2N82: [RRM ] by SMART
  • Other resources with information on 2N82
  • Community annotation for 2N82 at PDBWiki (http://pdbwiki.org)

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