2N83 Signaling Protein Transferase date Oct 02, 2015
title P75ntr Dd:Rip2 Card
authors Z.Lin, C.F.Ibanez
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Unp Residues 334-427
Synonym: Gp80-Lngfr, Low Affinity Neurotrophin Receptor P75 Affinity Nerve Growth Factor Receptor, Ngf Receptor, P75 Ic
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ngfr, Tnfrsf16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a-Derived

Molecule: Receptor-Interacting Serinethreonine-Protein Kin
Chain: B
Fragment: Unp Residues 435-539
Synonym: Card-Containing Interleukin-1 Beta-Converting Enzy Associated Kinase, Card-Containing Il-1 Beta Ice-Kinase, Ri Interacting Clarp Kinase, Receptor-Interacting Protein 2, R Tyrosine-Protein Kinase Ripk2;
Ec: 2.7.11.1, 2.7.10.2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ripk2, Cardiak, Rick, Rip2, Unq277pro314pro34092
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of death domain signaling in the p75 neurotrophin receptor., Lin Z, Tann JY, Goh ET, Kelly C, Lim KB, Gao JF, Ibanez CF, Elife. 2015 Dec 8;4. pii: e11692. doi: 10.7554/eLife.11692. PMID:26646181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (2n83.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 2N83
  • Original NMR restraints for 2N83 from PDB
  • Retrieve 2N83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N83 from S2C, [Save to disk]
  • View 2N83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N83
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n83_A] [2n83_B] [2n83]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2N83: [CARD] [DEATH ] by SMART
  • Other resources with information on 2N83
  • Community annotation for 2N83 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science