2N83 Signaling Protein Transferase date Oct 02, 2015
title P75ntr Dd:Rip2 Card
authors Z.Lin, C.F.Ibanez
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Unp Residues 334-427
Synonym: Gp80-Lngfr, Low Affinity Neurotrophin Receptor P75 Affinity Nerve Growth Factor Receptor, Ngf Receptor, P75 Ic
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ngfr, Tnfrsf16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a-Derived

Molecule: Receptor-Interacting Serinethreonine-Protein Kin
Chain: B
Fragment: Unp Residues 435-539
Synonym: Card-Containing Interleukin-1 Beta-Converting Enzy Associated Kinase, Card-Containing Il-1 Beta Ice-Kinase, Ri Interacting Clarp Kinase, Receptor-Interacting Protein 2, R Tyrosine-Protein Kinase Ripk2;
Ec: 2.7.11.1, 2.7.10.2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ripk2, Cardiak, Rick, Rip2, Unq277pro314pro34092
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Primary referenceStructural basis of death domain signaling in the p75 neurotrophin receptor., Lin Z, Tann JY, Goh ET, Kelly C, Lim KB, Gao JF, Ibanez CF, Elife. 2015 Dec 8;4. pii: e11692. doi: 10.7554/eLife.11692. PMID:26646181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (2n83.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 2N83
  • Original NMR restraints for 2N83 from PDB
  • Retrieve 2N83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N83 from S2C, [Save to disk]
  • View 2N83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N83
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2n83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n83_A] [2n83_B] [2n83]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2N83: [CARD] [DEATH ] by SMART
  • Other resources with information on 2N83
  • Community annotation for 2N83 at PDBWiki (http://pdbwiki.org)

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