2NBV Protein Binding date Mar 12, 2016
title Solution Structure Of The Rpn13 Pru Domain Engaging The Hpli Domain
authors X.Chen, K.J.Walters
compound source
Molecule: Proteasomal Ubiquitin Receptor Adrm1
Chain: A
Fragment: Residues 1-150
Synonym: 110 Kda Cell Membrane Glycoprotein, Gp110, Adhesio Regulating Molecule 1, Arm-1, Proteasome Regulatory Particl Atpase 13, Hrpn13, Rpn13 Homolog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adrm1, Gp110
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Prset

Molecule: Ubiquilin-2
Chain: B
Fragment: Residues 26-103
Synonym: Chap1, Dsk2 Homolog, Protein Linking Iap With Cyto 2, Plic-2, Hplic-2, Ubiquitin-Like Product Chap1dsk2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubqln2, N4bp4, Plic2, Hrihfb2157
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex4t1
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome., Chen X, Randles L, Shi K, Tarasov SG, Aihara H, Walters KJ, Structure. 2016 Jul 6. pii: S0969-2126(16)30125-3. doi:, 10.1016/j.str.2016.05.018. PMID:27396824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1142 Kb) [Save to disk]
  • Biological Unit Coordinates (2nbv.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 2NBV
  • Original NMR restraints for 2NBV from PDB
  • Retrieve 2NBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NBV from S2C, [Save to disk]
  • View 2NBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NBV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2nbv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nbv_B] [2nbv_A] [2nbv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2NBV: [UBQ ] by SMART
  • Other resources with information on 2NBV
  • Community annotation for 2NBV at PDBWiki (http://pdbwiki.org)

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