2NBV Solution structure of the Rpn13 Pru domain engaging the hPLIC2 UBL domain date
authors Chen, X., Walters, K.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome., Chen X, Randles L, Shi K, Tarasov SG, Aihara H, Walters KJ, Structure. 2016 Jul 6. pii: S0969-2126(16)30125-3. doi:, 10.1016/j.str.2016.05.018. PMID:27396824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1109 Kb) [Save to disk]
  • Biological Unit Coordinates (2nbv.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 2NBV
  • Original NMR restraints for 2NBV from PDB
  • Retrieve 2NBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NBV from S2C, [Save to disk]
  • View 2NBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NBV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nbv_B] [2nbv_A] [2nbv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2NBV: [UBQ ] by SMART
  • Other resources with information on 2NBV
  • Community annotation for 2NBV at PDBWiki (http://pdbwiki.org)

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