2NCW Antimicrobial Protein date Apr 18, 2016
title Nmr Structure Of Wwwkye21 Structure In Lps Micelles
authors A.Datta, A.Bhunia
compound source
Molecule: Heparin Cofactor 2
Chain: A
Fragment: Glycosaminoglycan-Binding Site Residues 189-212
Synonym: Heparin Cofactor II, Hc-II, Protease Inhibitor Leu Hls2, Serpin D1;
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Primary referenceTryptophan end-tagging for promoted lipopolysaccharide interactions and anti-inflammatory effects., Singh S, Datta A, Schmidtchen A, Bhunia A, Malmsten M, Sci Rep. 2017 Mar 16;7(1):212. doi: 10.1038/s41598-017-00188-7. PMID:28303012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (2ncw.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2NCW
  • Original NMR restraints for 2NCW from PDB
  • Retrieve 2NCW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NCW from S2C, [Save to disk]
  • View 2NCW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NCW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2ncw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ncw_A] [2ncw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2NCW
  • Community annotation for 2NCW at PDBWiki (http://pdbwiki.org)

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