2ND0 Transcription Viral Protein date Apr 18, 2016
title Solution Nmr Structures Of Brd4 Et Domain With Lana Peptide
authors L.Zeng, M.Zhou
compound source
Molecule: Bromodomain-Containing Protein 4
Chain: A
Fragment: Residues 601-683
Synonym: Protein Hunk1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet32a

Molecule: Lana
Chain: B
Fragment: Residues 1086-1104
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Herpesvirus 8
Organism_common: Hhv-8
Organism_taxid: 37296
methodSolution NMR
Primary referenceStructural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4., Zhang Q, Zeng L, Shen C, Ju Y, Konuma T, Zhao C, Vakoc CR, Zhou MM, Structure. 2016 Jul 6;24(7):1201-8. doi: 10.1016/j.str.2016.04.019. Epub 2016 Jun, 9. PMID:27291650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (568 Kb) [Save to disk]
  • Biological Unit Coordinates (2nd0.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2ND0
  • Original NMR restraints for 2ND0 from PDB
  • Retrieve 2ND0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ND0 from S2C, [Save to disk]
  • View 2ND0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ND0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2nd0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nd0] [2nd0_A] [2nd0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2ND0
  • Community annotation for 2ND0 at PDBWiki (http://pdbwiki.org)

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