2NDH Immune System date May 27, 2016
title Nmr Solution Structure Of Maltirap Tir Domain (C116a)
authors P.Lavrencic, M.Mobli
compound source
Molecule: Tollinterleukin-1 Receptor Domain-Containing Ada Protein;
Chain: A
Fragment: Tir Domain Residues 79-221
Synonym: Tir Domain-Containing Adapter Protein, Adaptor Pro Wyatt, Myd88 Adapter-Like Protein, Myd88-2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tirap, Mal
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl-21
Expression_system_vector: Pmcsg7
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the TLR adaptor MAL/TIRAP reveals an intact BB loop and supports MAL Cys91 glutathionylation for signaling., Hughes MM, Lavrencic P, Coll RC, Ve T, Ryan DG, Williams NC, Menon D, Mansell A, Board PG, Mobli M, Kobe B, O'Neill LAJ, Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6480-E6489. doi:, 10.1073/pnas.1701868114. Epub 2017 Jul 24. PMID:28739909
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (848 Kb) [Save to disk]
  • Biological Unit Coordinates (2ndh.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 2NDH
  • Original NMR restraints for 2NDH from PDB
  • Retrieve 2NDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NDH from S2C, [Save to disk]
  • View 2NDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NDH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2ndh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ndh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2NDH
  • Community annotation for 2NDH at PDBWiki (http://pdbwiki.org)

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