2NLU Hormone Growth Factor date Oct 20, 2006
title Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma- Derived Growth Factor
authors S.C.Sue, W.T.Lee, T.H.Huang
compound source
Molecule: Hepatoma-Derived Growth Factor
Chain: A, B
Fragment: Hath Domain
Synonym: Hdgf, High-Mobility Group Protein 1-Like 2, Hmg- 1l2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
methodSolution NMR
Primary referencePWWP module of human hepatoma-derived growth factor forms a domain-swapped dimer with much higher affinity for heparin., Sue SC, Lee WT, Tien SC, Lee SC, Yu JG, Wu WJ, Wu WG, Huang TH, J Mol Biol. 2007 Mar 23;367(2):456-72. Epub 2007 Jan 9. PMID:17270212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (997 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2NLU
  • Original NMR restraints for 2NLU from PDB
  • Retrieve 2NLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NLU from S2C, [Save to disk]
  • View 2NLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NLU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NLU, from MSDmotif at EBI
  • Fold representative 2nlu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nlu_B] [2nlu] [2nlu_A]
  • SWISS-PROT database: [P51858]
  • Domain organization of [HDGF_HUMAN] by SWISSPFAM
  • Domain found in 2NLU: [PWWP ] by SMART
  • Other resources with information on 2NLU
  • Community annotation for 2NLU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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