2NLW Translation date Oct 20, 2006
title Solution Structure Of The Rrm Domain Of Human Eukaryotic Initiation Factor 3b
authors L.Elantak, A.G.Tzakos, N.Locker, P.J.Lukavsky
compound source
Molecule: Eukaryotic Translation Initiation Factor 3 Subunit 9;
Chain: A
Fragment: Rna Recognition Motif
Synonym: Eif-3 Eta, Eif3 P116, Eif3 P110, Eif3b, Prt1 Homolog, Hprt1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif3s9
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
methodSolution NMR
note 2NLW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of eIF3b-RRM and its interaction with eIF3j: Structural insights into the recruitment of eIF3b to the 40S ribosomal subunit., Elantak L, Tzakos AG, Locker N, Lukavsky PJ, J Biol Chem. 2006 Dec 26;. PMID:17190833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (449 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2NLW
  • Original NMR restraints for 2NLW from PDB
  • Retrieve 2NLW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NLW from S2C, [Save to disk]
  • View 2NLW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NLW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NLW, from MSDmotif at EBI
  • Fold representative 2nlw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nlw_A] [2nlw]
  • SWISS-PROT database: [P55884]
  • Domain organization of [EIF3B_HUMAN] by SWISSPFAM
  • Domain found in 2NLW: [RRM ] by SMART
  • Alignments of the sequence of 2NLW with the sequences similar proteins can be viewed for 2NLW's classification [EIF3B_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [EIF3B_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2NLW
  • Community annotation for 2NLW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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