2NNQ Lipid Transport date Oct 24, 2006
title Crystal Structure Of Human Adipocyte Fatty Acid Binding Prot Complex With ((2'-(5-Ethyl-3,4-Diphenyl-1h-Pyrazol-1-Yl)-3- Biphenylyl)Oxy)Acetic Acid
authors B.L.Jacobson
compound source
Molecule: Fatty Acid-Binding Protein, Adipocyte
Chain: A
Synonym: Afabp, Adipocyte Lipid-Binding Protein, Albp, A-Fa
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fabp4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.620 53.930 74.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4, T4B BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotent and selective biphenyl azole inhibitors of adipocyte fatty acid binding protein (aFABP)., Sulsky R, Magnin DR, Huang Y, Simpkins L, Taunk P, Patel M, Zhu Y, Stouch TR, Bassolino-Klimas D, Parker R, Harrity T, Stoffel R, Taylor DS, Lavoie TB, Kish K, Jacobson BL, Sheriff S, Adam LP, Ewing WR, Robl JA, Bioorg Med Chem Lett. 2007 Jun 15;17(12):3511-5. Epub 2006 Dec 21. PMID:17502136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (2nnq.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2NNQ
  • CSU: Contacts of Structural Units for 2NNQ
  • Likely Quarternary Molecular Structure file(s) for 2NNQ
  • Structure Factors (81 Kb)
  • Retrieve 2NNQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NNQ from S2C, [Save to disk]
  • Re-refined 2nnq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2NNQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NNQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NNQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nnq_A] [2nnq]
  • SWISS-PROT database: [P15090]
  • Domain organization of [FABP4_HUMAN] by SWISSPFAM
    • Other resources with information on 2NNQ
  • Community annotation for 2NNQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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