2NPA	Transcription	date	Oct 26, 2006
title	The Crystal Structure Of The Human Pparaplpha Ligand Binding Complex With A A-Hydroxyimino Phenylpropanoic Acid
authors	K.H.Kim, H.K.Chung, H.O.Han, S.H.Kim, J.S.Koh, G.T.Kim
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Alpha Chain: A, C Fragment: Ligand Binding Domain Synonym: Ppar-Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Src- Peptide From Nuclear Receptor Coactivator 1 Chain: B, D Synonym: Src- Peptide From Steroid Receptor Coactivator Engineered: Yes		Synthetic: Yes Other_details: Chemically Synthesized 21 Mer Portion Of The Src-1
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.909 100.074 61.311 90.00 100.14 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MMB	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	Design and synthesis of oxime ethers of alpha-acyl-beta-phenylpropanoic acids as PPAR dual agonists., Oon Han H, Kim SH, Kim KH, Hur GC, Joo Yim H, Chung HK, Ho Woo S, Dong Koo K, Lee CS, Sung Koh J, Kim GT, Bioorg Med Chem Lett. 2007 Feb 15;17(4):937-41. Epub 2006 Nov 18. PMID:17157019

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (2npa.pdb1.gz) 46 Kb Biological Unit Coordinates (2npa.pdb2.gz) 45 Kb LPC: Ligand-Protein Contacts for 2NPA CSU: Contacts of Structural Units for 2NPA Likely Quarternary Molecular Structure file(s) for 2NPA Structure Factors (228 Kb) Retrieve 2NPA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NPA from S2C, [Save to disk] Re-refined 2npa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NPA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NPA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NPA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2npa_C] [2npa_A] [2npa_D] [2npa_B] [2npa] SWISS-PROT database: [Q15788] [Q07869] Domain organization of [NCOA1_HUMAN] [PPARA_HUMAN] by SWISSPFAM Domain found in 2NPA: [HOLI ] by SMART

Other resources with information on 2NPA

Community annotation for 2NPA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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