2NQC Immune System date Oct 31, 2006
title Crystal Structure Of Ig-Like Domain 23 From Human Filamin C
authors L.Sjekloca, R.Pudas, B.Sjoeblom, P.Konarev, O.Carugo, V.Rybin, T.R D.Svergun, J.Ylanne, K.Djinovic-Carugo
compound source
Molecule: Filamin-C
Chain: A
Fragment: Ig-Like Domain 23
Synonym: Gamma-Filamin, Filamin-2, Protein Flnc, Actin-Bind Protein, Abp-L, Abp-280-Like Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.188 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.141 52.141 69.216 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand GOL, IMD, NI enzyme
Primary referenceCrystal structure of human filamin C domain 23 and small angle scattering model for filamin C 23-24 dimer., Sjekloca L, Pudas R, Sjoblom B, Konarev P, Carugo O, Rybin V, Kiema TR, Svergun D, Ylanne J, Carugo KD, J Mol Biol. 2007 May 11;368(4):1011-23. Epub 2007 Feb 20. PMID:17379241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (2nqc.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 2NQC
  • CSU: Contacts of Structural Units for 2NQC
  • Likely Quarternary Molecular Structure file(s) for 2NQC
  • Structure Factors (99 Kb)
  • Retrieve 2NQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NQC from S2C, [Save to disk]
  • Re-refined 2nqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2NQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NQC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NQC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nqc_A] [2nqc]
  • SWISS-PROT database: [Q14315]
  • Belongs to the dystrophin (dystrophin) family according to TCDB.
  • Domain organization of [FLNC_HUMAN] by SWISSPFAM
  • Domain found in 2NQC: [IG_FLMN ] by SMART
    • Other resources with information on 2NQC
  • Community annotation for 2NQC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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