2NR6	Hydrolase Immune System	date	Nov 01, 2006
title	Crystal Structure Of The Complex Of Antibody And The Allerge
authors	M.Li, A.Gustchina, A.Wlodawer, A.Pomes, S.Wunschmann
compound		source
Molecule: Aspartic Protease Bla G 2 Chain: A, B Fragment: Nig2 Synonym: Allergen Bla G II Ec: 3.4.23.- Engineered: Yes Mutation: Yes		Organism_scientific: Blattella Germanica Organism_common: German Cockroach Organism_taxid: 6973 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: Gs115 Expression_system_plasmid: Pgapzac
Molecule: Antibody Light Chain Chain: C, E Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_cell: Hybridoma
Molecule: Antibody Heavy Chain Chain: D, F Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_cell: Hybridoma
symmetry	Space Group: P 1 21 1	R_factor 0.232 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.004 103.187 146.329 90.00 94.83 90.00
method	X-Ray Diffraction	resolution	2.81 Å
ligand	CSX, NAG, ZN	enzyme	Hydrolase E.C.3.4.23 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of a dimerized cockroach allergen Bla g 2 complexed with a monoclonal antibody., Li M, Gustchina A, Alexandratos J, Wlodawer A, Wunschmann S, Kepley CL, Chapman MD, Pomes A, J Biol Chem. 2008 Aug 15;283(33):22806-14. Epub 2008 Jun 2. PMID:18519566

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk] Biological Unit Coordinates (2nr6.pdb1.gz) 103 Kb Biological Unit Coordinates (2nr6.pdb2.gz) 103 Kb LPC: Ligand-Protein Contacts for 2NR6 CSU: Contacts of Structural Units for 2NR6 Likely Quarternary Molecular Structure file(s) for 2NR6 Structure Factors (606 Kb) Retrieve 2NR6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NR6 from S2C, [Save to disk] Re-refined 2nr6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NR6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NR6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NR6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nr6_E] [2nr6_C] [2nr6_B] [2nr6_A] [2nr6] [2nr6_D] [2nr6_F] SWISS-PROT database: [P54958] [P01837] Domain organization of [ASP2_BLAGE] [IGKC_MOUSE] by SWISSPFAM Domains found in 2NR6: [IG_like] [IGv ] by SMART

Other resources with information on 2NR6

Community annotation for 2NR6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---