2NRY Transferase date Nov 02, 2006
title Crystal Structure Of Irak-4
authors Z.Wang, J.Liu, N.P.C.Walker
compound source
Molecule: Interleukin-1 Receptor-Associated Kinase 4
Chain: A, B, C, D
Fragment: Protein Kinase
Synonym: Irak-4, Ny- Ren-64 Antigen
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.502 139.748 87.656 90.00 123.76 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand STU, TPO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of IRAK-4 kinase in complex with inhibitors: a serine/threonine kinase with tyrosine as a gatekeeper., Wang Z, Liu J, Sudom A, Ayres M, Li S, Wesche H, Powers JP, Walker NP, Structure. 2006 Dec;14(12):1835-44. PMID:17161373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (2nry.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2nry.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (2nry.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (2nry.pdb4.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2NRY
  • CSU: Contacts of Structural Units for 2NRY
  • Likely Quarternary Molecular Structure file(s) for 2NRY
  • Structure Factors (616 Kb)
  • Retrieve 2NRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NRY from S2C, [Save to disk]
  • Re-refined 2nry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NRY, from MSDmotif at EBI
  • Fold representative 2nry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nry_C] [2nry_D] [2nry_A] [2nry_B] [2nry]
  • SWISS-PROT database: [Q9NWZ3]
  • Domain organization of [IRAK4_HUMAN] by SWISSPFAM
  • Domain found in 2NRY: [STYKc ] by SMART
  • Alignments of the sequence of 2NRY with the sequences similar proteins can be viewed for 2NRY's classification [IRAK4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [IRAK4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2NRY
  • Community annotation for 2NRY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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