2NT0 Hydrolase date Nov 06, 2006
title Acid-Beta-Glucosidase Low Ph, Glycerol Bound
authors R.L.Lieberman, G.A.Petsko, D.Ringe
compound source
Molecule: Glucosylceramidase
Chain: A, B, C, D
Synonym: Beta-Glucocerebrosidase, Acid Beta-Glucosidase, D- N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gba
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Ovary
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.215
length a length b length c angle alpha angle beta angle gamma
107.941 91.759 152.810 90.00 110.96 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand GOL, NAG, SO4 enzyme Hydrolase E.C. BRENDA
note 2NT0 is a representative structure
A, D, C, B
  • negative regulation of inter...

  • Primary referenceStructure of acid beta-glucosidase with pharmacological chaperone provides insight into Gaucher disease., Lieberman RL, Wustman BA, Huertas P, Powe AC Jr, Pine CW, Khanna R, Schlossmacher MG, Ringe D, Petsko GA, Nat Chem Biol. 2007 Feb;3(2):101-7. Epub 2006 Dec 24. PMID:17187079
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk]
  • Biological Unit Coordinates (2nt0.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (2nt0.pdb2.gz) 94 Kb
  • Biological Unit Coordinates (2nt0.pdb3.gz) 93 Kb
  • Biological Unit Coordinates (2nt0.pdb4.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2NT0
  • CSU: Contacts of Structural Units for 2NT0
  • Structure Factors (1880 Kb)
  • Retrieve 2NT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NT0 from S2C, [Save to disk]
  • Re-refined 2nt0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NT0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NT0, from MSDmotif at EBI
  • Fold representative 2nt0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nt0_D] [2nt0_B] [2nt0_A] [2nt0_C] [2nt0]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Other resources with information on 2NT0
  • Community annotation for 2NT0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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