2NUD	Toxin Protein Binding	date	Nov 09, 2006
title	The Structure Of The Type III Effector Avrb Complexed With A Affinity Rin4 Peptide
authors	A.U.Singer, D.Desveaux, A.J.Wu, B.Mcnulty, J.Sondek, J.L.Dangl
compound		source
Molecule: Avirulence B Protein Chain: A, B Engineered: Yes		Organism_scientific: Pseudomonas Syringae Pv. Glycinea Organism_taxid: 318 Strain: Pv Glycinea Gene: Avrb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproex-Hta
Molecule: Rpm1-Interacting Protein 4 Chain: C, D Fragment: Rin4 Peptide, Residues 142-176 Synonym: Rin4 Engineered: Yes		Synthetic: Yes Other_details: Rin4 Peptide Synthesized Naturally From The Arabidopsis Rin4 Sequence. N- And C-Termini Blocked By Meth And Amidation, Respectively
symmetry	Space Group: P 1 21 1	R_factor 0.210 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.884 58.166 119.767 90.00 89.92 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ETF, TRS	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction., Desveaux D, Singer AU, Wu AJ, McNulty BC, Musselwhite L, Nimchuk Z, Sondek J, Dangl JL, PLoS Pathog. 2007 Mar;3(3):e48. PMID:17397263

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (2nud.pdb1.gz) 54 Kb Biological Unit Coordinates (2nud.pdb2.gz) 55 Kb LPC: Ligand-Protein Contacts for 2NUD CSU: Contacts of Structural Units for 2NUD Likely Quarternary Molecular Structure file(s) for 2NUD Structure Factors (218 Kb) Retrieve 2NUD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NUD from S2C, [Save to disk] Re-refined 2nud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NUD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NUD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NUD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nud_B] [2nud_D] [2nud_A] [2nud] [2nud_C] SWISS-PROT database: [P13835] [Q8GYN5] Domain organization of [AVRB_PSESG] [RIN4_ARATH] by SWISSPFAM

Other resources with information on 2NUD

Community annotation for 2NUD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---