2NV7 Transcription date Nov 10, 2006
title Crystal Structure Of Estrogen Receptor Beta Complexed With Way-555
authors R.E.Mewshaw, M.S.Bowen, H.A.Harris, Z.B.Xu, E.S.Manas, S.T.Cohn, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Estrogen Receptor Beta
Chain: A, B
Synonym: Er-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr2, Estrb, Nr3a2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b

Molecule: Nuclear Receptor Coactivator 1
Chain: C, D
Synonym: Ncoa-1, Steroid Receptor Coactivator 1, Src-1, Rip160, Protein Hin-2, Ny-Ren-52 Antigen;
Ec: 2.3.1.48
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Was Derived From Steroid Receptor Coactivator-1
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.130 88.676 100.459 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 555 BindingDB enzyme Transferase E.C.2.3.1.48 BRENDA
Primary referenceERbeta ligands. Part 5: synthesis and structure-activity relationships of a series of 4'-hydroxyphenyl-aryl-carbaldehyde oxime derivatives., Mewshaw RE, Bowen SM, Harris HA, Xu ZB, Manas ES, Cohn ST, Bioorg Med Chem Lett. 2007 Feb 15;17(4):902-6. Epub 2006 Dec 1. PMID:17188490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2nv7.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2NV7
  • CSU: Contacts of Structural Units for 2NV7
  • Likely Quarternary Molecular Structure file(s) for 2NV7
  • Retrieve 2NV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NV7 from S2C, [Save to disk]
  • View 2NV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NV7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NV7, from MSDmotif at EBI
  • Fold representative 2nv7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nv7_D] [2nv7_A] [2nv7] [2nv7_B] [2nv7_C]
  • SWISS-PROT database: [Q92731] [Q15788]
  • Domain organization of [ESR2_HUMAN] [NCOA1_HUMAN] by SWISSPFAM
  • Domain found in 2NV7: [HOLI ] by SMART
  • Alignments of the sequence of 2NV7 with the sequences similar proteins can be viewed for 2NV7's classification [ESR2_HUMAN] [NCOA1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ESR2_HUMAN] [NCOA1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2NV7
  • Community annotation for 2NV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science