2NVB Oxidoreductase date Nov 12, 2006
title Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs)
authors E.Goihberg, S.Tel-Or, M.Peretz, F.Frolow, O.Dym, Y.Burstein, Israel Structural Proteomics Center (Ispc)
compound source
Molecule: Nadp-Dependent Alcohol Dehydrogenase
Chain: A, B, C, D
Ec: 1.1.1.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermoanaerobacter Brockii
Organism_taxid: 29323
Gene: Adh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bluescript
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.598 125.008 167.111 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAP, ZN enzyme Oxidoreductase E.C.1.1.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThermal stabilization of the protozoan Entamoeba histolytica alcohol dehydrogenase by a single proline substitution., Goihberg E, Dym O, Tel-Or S, Shimon L, Frolow F, Peretz M, Burstein Y, Proteins. 2008 Feb 7;. PMID:18260103
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (2nvb.pdb1.gz) 218 Kb
  • Biological Unit Coordinates (2nvb.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (2nvb.pdb3.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 2NVB
  • CSU: Contacts of Structural Units for 2NVB
  • Likely Quarternary Molecular Structure file(s) for 2NVB
  • Structure Factors (321 Kb)
  • Retrieve 2NVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NVB from S2C, [Save to disk]
  • Re-refined 2nvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NVB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NVB, from MSDmotif at EBI
  • Fold representative 2nvb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nvb_A] [2nvb_D] [2nvb_C] [2nvb_B] [2nvb]
  • SWISS-PROT database: [P14941]
  • Domain organization of [ADH_THEBR] by SWISSPFAM
  • Other resources with information on 2NVB
  • Community annotation for 2NVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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