2NXC Transferase date Nov 17, 2006
title Apo-Form Of T. Thermophilus Ribosomal Protein L11 Methyltran (Prma)
authors H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound source
Molecule: Ribosomal Protein L11 Methyltransferase
Chain: A
Synonym: L11 Mtase
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Prma
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30b
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.521 76.557 61.878 90.00 130.01 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand
enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRecognition of ribosomal protein L11 by the protein trimethyltransferase PrmA., Demirci H, Gregory ST, Dahlberg AE, Jogl G, EMBO J. 2007 Jan 24;26(2):567-77. Epub 2007 Jan 11. PMID:17215866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2nxc.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 2NXC
  • Likely Quarternary Molecular Structure file(s) for 2NXC
  • Structure Factors (555 Kb)
  • Retrieve 2NXC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NXC from S2C, [Save to disk]
  • Re-refined 2nxc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NXC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NXC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NXC, from MSDmotif at EBI
  • Fold representative 2nxc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nxc_A] [2nxc]
  • SWISS-PROT database: [Q84BQ9]
  • Domain organization of [PRMA_THET8] by SWISSPFAM
  • Other resources with information on 2NXC
  • Community annotation for 2NXC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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