2NXE Transferase date Nov 17, 2006
title T. Thermophilus Ribosomal Protein L11 Methyltransferase (Prm Complex With S-Adenosyl-L-Methionine
authors H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound source
Molecule: Ribosomal Protein L11 Methyltransferase
Chain: A, B
Synonym: L11 Mtase
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Prma
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30b
symmetry Space Group: H 3
R_factor 0.201 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.179 187.179 45.189 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand SAM enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRecognition of ribosomal protein L11 by the protein trimethyltransferase PrmA., Demirci H, Gregory ST, Dahlberg AE, Jogl G, EMBO J. 2007 Jan 24;26(2):567-77. Epub 2007 Jan 11. PMID:17215866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2nxe.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (2nxe.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2NXE
  • CSU: Contacts of Structural Units for 2NXE
  • Likely Quarternary Molecular Structure file(s) for 2NXE
  • Structure Factors (471 Kb)
  • Retrieve 2NXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NXE from S2C, [Save to disk]
  • Re-refined 2nxe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NXE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NXE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nxe] [2nxe_A] [2nxe_B]
  • SWISS-PROT database: [Q84BQ9]
  • Domain organization of [PRMA_THET8] by SWISSPFAM
  • Other resources with information on 2NXE
  • Community annotation for 2NXE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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