2NXP Transcription date Nov 17, 2006
title Structure Of Ntd2 Domain Of The Human Taf5 Subunit Of Tfiid
authors S.Bhattacharya, S.Takada, R.H.Jacobson
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 5
Chain: A, B, C, D, E, F, G, H
Fragment: N-Terminal Conserved Domain 2 (Ntd2)
Synonym: Transcription Initiation Factor Tfiid 100 Kda Subunit, Tafii, 100, Tafii-100, Tafii100;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15
symmetry Space Group: P 1 21 1
R_factor 0.213 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.620 61.829 133.357 90.00 105.16 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand CA, MSE enzyme
Primary referenceStructural analysis and dimerization potential of the human TAF5 subunit of TFIID., Bhattacharya S, Takada S, Jacobson RH, Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1189-94. Epub 2007 Jan 16. PMID:17227857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (2nxp.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2nxp.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (2nxp.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (2nxp.pdb4.gz) 30 Kb
  • Biological Unit Coordinates (2nxp.pdb5.gz) 31 Kb
  • Biological Unit Coordinates (2nxp.pdb6.gz) 30 Kb
  • Biological Unit Coordinates (2nxp.pdb7.gz) 30 Kb
  • Biological Unit Coordinates (2nxp.pdb8.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2NXP
  • CSU: Contacts of Structural Units for 2NXP
  • Likely Quarternary Molecular Structure file(s) for 2NXP
  • Structure Factors (1162 Kb)
  • Retrieve 2NXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NXP from S2C, [Save to disk]
  • Re-refined 2nxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NXP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NXP, from MSDmotif at EBI
  • Fold representative 2nxp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nxp_F] [2nxp_E] [2nxp_B] [2nxp_H] [2nxp_C] [2nxp_A] [2nxp_D] [2nxp_G] [2nxp]
  • SWISS-PROT database: [Q15542]
  • Domain organization of [TAF5_HUMAN] by SWISSPFAM
  • Other resources with information on 2NXP
  • Community annotation for 2NXP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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