2NYQ	Hydrolase	date	Nov 21, 2006
title	Structure Of Vibrio Proteolyticus Aminopeptidase With A Boun Fragment Of Dlwcf
authors	B.Bennett, A.Kumar, B.Narayanan, J.J.Kim
compound		source
Molecule: Aminopeptidase Chain: A Fragment: Bacterial Leucyl Aminopeptidase, Residues 97-405 Ec: 3.4.11.10		Organism_scientific: Vibrio Proteolyticus Organism_taxid: 671 Strain: Attc 15338, Dsm 30189, Ncbm 1326
Molecule: Tetrapeptide Chain: B Engineered: Yes Other_details: D-Leu-L-Trp-L-Cys-L-Phe		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: The Tetrapeptide Was Chemically Synthesised Solid-Phase Manual Synthesis Via Fmoc-Derivatized Amino Aci Rink-Amide Resin.
symmetry	Space Group: P 61 2 2	R_factor 0.191 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.800 107.800 99.600 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ZN	enzyme	Hydrolase E.C.3.4.11.10 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (2nyq.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 2NYQ CSU: Contacts of Structural Units for 2NYQ Likely Quarternary Molecular Structure file(s) for 2NYQ Structure Factors (116 Kb) Retrieve 2NYQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NYQ from S2C, [Save to disk] Re-refined 2nyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NYQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NYQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NYQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nyq_A] [2nyq_B] [2nyq] SWISS-PROT database: [Q01693] Domain organization of [AMPX_VIBPR] by SWISSPFAM

Other resources with information on 2NYQ

Community annotation for 2NYQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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