2NYZ	Viral Protein Cytokine	date	Nov 21, 2006
title	Viral Chemokine Binding Protein M3 From Murine Gammaherpesvi Complex With The C- Chemokine Xcl1
authors	J.M.Alexander-Brett, D.H.Fremont
compound		source
Molecule: Hypothetical Protein Gammahv.M3 Chain: A, B Synonym: M3 Protein Engineered: Yes		Organism_scientific: Murid Herpesvirus 4 Organism_common: Murine Herpesvirus 68 Organism_taxid: 33708 Gene: Gammahv.M3, M3 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-1
Molecule: Lymphotactin Chain: D, E Synonym: Xcl1, Cytokine Scm-1, Atac, Lymphotaxin, Scm-1-Alp Inducible Cytokine C1, Xc Chemokine Ligand 1; Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Can Be Naturally Found In Homo Sapiens (Huma
symmetry	Space Group: I 21 21 21	R_factor 0.219 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.370 103.190 290.940 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
Gene Ontology	Chain Function Process Component A, B D, E chemokine receptor binding negative regulation of inter...
Primary reference	Dual GPCR and GAG mimicry by the M3 chemokine decoy receptor., Alexander-Brett JM, Fremont DH, J Exp Med. 2007 Dec 24;204(13):3157-72. Epub 2007 Dec 10. PMID:18070938

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (2nyz.pdb1.gz) 140 Kb CSU: Contacts of Structural Units for 2NYZ Likely Quarternary Molecular Structure file(s) for 2NYZ Structure Factors (984 Kb) Retrieve 2NYZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NYZ from S2C, [Save to disk] Re-refined 2nyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NYZ in 3D

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Visual 3D analysis of 2NYZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NYZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nyz_B] [2nyz] [2nyz_A] [2nyz_D] [2nyz_E] SWISS-PROT database: [O41925] [P47992] Domain organization of [O41925_MHV68] [XCL1_HUMAN] by SWISSPFAM Domain found in 2NYZ: [SCY ] by SMART

Other resources with information on 2NYZ

Community annotation for 2NYZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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