2O0O	Cytokine, Hormone Growth Factor	date	Nov 27, 2006
title	Crystal Structure Of Tl1a
authors	T.C.Jin, S.Kim, F.Guo, A.J.Howard, Y.Z.Zhang
compound		source
Molecule: Tnf Superfamily Ligand Tl1a Chain: A, B, C Synonym: Tumor Necrosis Factor Ligand Superfamily Member 15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tnfsf15 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet-1
symmetry	Space Group: P 41 21 2	R_factor 0.243 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.754 116.754 118.941 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	X-ray crystal structure of TNF ligand family member TL1A at 2.1A., Jin T, Guo F, Kim S, Howard A, Zhang YZ, Biochem Biophys Res Commun. 2007 Dec 7;364(1):1-6. Epub 2007 Oct 1. PMID:17935696

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2o0o.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 2O0O CSU: Contacts of Structural Units for 2O0O Likely Quarternary Molecular Structure file(s) for 2O0O Structure Factors (213 Kb) Retrieve 2O0O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O0O from S2C, [Save to disk] Re-refined 2o0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O0O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O0O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O0O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o0o_B] [2o0o_A] [2o0o] [2o0o_C] SWISS-PROT database: [O95150] Domain organization of [TNF15_HUMAN] by SWISSPFAM Domain found in 2O0O: [TNF ] by SMART

Other resources with information on 2O0O

Community annotation for 2O0O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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