2O1F Transferase date Nov 28, 2006
title Natural Occuring Mutation Of Human Abo(H) Galactosyltransfer Gtbm214r
authors J.A.Letts, S.N.Borisova, S.V.Evans
compound source
Molecule: Abo Glycosyltransferase
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abo
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcwdeltalac
symmetry Space Group: C 2 2 21
R_factor 0.184 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.520 149.670 79.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand HG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural effects of naturally occurring human blood group B galactosyltransferase mutations adjacent to the DXD motif., Persson M, Letts JA, Hosseini-Maaf B, Borisova SN, Palcic MM, Evans SV, Olsson ML, J Biol Chem. 2007 Mar 30;282(13):9564-70. Epub 2007 Jan 26. PMID:17259183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2o1f.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2o1f.pdb2.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 2O1F
  • CSU: Contacts of Structural Units for 2O1F
  • Likely Quarternary Molecular Structure file(s) for 2O1F
  • Structure Factors (159 Kb)
  • Retrieve 2O1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O1F from S2C, [Save to disk]
  • Re-refined 2o1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O1F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O1F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o1f] [2o1f_A]
  • SWISS-PROT database: [P16442]
  • Domain organization of [BGAT_HUMAN] by SWISSPFAM
    • Other resources with information on 2O1F
  • Community annotation for 2O1F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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