2O2D Crystal structure of phosphoglucose isomerase from Trypanosoma brucei complexed with citrate date
authors Arsenieva, D., Mazock, G.H., Appavu, B.L., Jeffery, C.J.
compound source
symmetry
R_factor
R_Free 0.2356
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand CIT, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of phosphoglucose isomerase from Trypanosoma brucei complexed with glucose-6-phosphate at 1.6 A resolution., Arsenieva D, Appavu BL, Mazock GH, Jeffery CJ, Proteins. 2008 Jun 16. PMID:18561188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (2o2d.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (2o2d.pdb2.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 2O2D
  • CSU: Contacts of Structural Units for 2O2D
  • Likely Quarternary Molecular Structure file(s) for 2O2D
  • Structure Factors (1155 Kb)
  • Retrieve 2O2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O2D from S2C, [Save to disk]
  • Re-refined 2o2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O2D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O2D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o2d_A] [2o2d_B] [2o2d_C] [2o2d]
  • SWISS-PROT database: [P13377]
  • Domain organization of [G6PI_TRYBB] by SWISSPFAM
  • Other resources with information on 2O2D
  • Community annotation for 2O2D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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