2O2O Protein Binding date Nov 30, 2006
title Solution Structure Of Domain B From Human Cin85 Protein
authors A.Ababou, M.Pfuhl, I.Dikic, J.E.Ladbury
compound source
Molecule: Sh3-Domain Kinase-Binding Protein 1
Chain: A
Fragment: Cin85_b
Synonym: Sh3-Domain B, Cbl-Interacting Protein Of 85 Kda, Human Src-Family Kinase-Binding Protein 1, Hsb-1, Cd2- Binding Protein 3, Cd2bp3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sh3kbp1, Cin85
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2O2O
  • Original NMR restraints for 2O2O from PDB
  • Retrieve 2O2O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O2O from S2C, [Save to disk]
  • View 2O2O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O2O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O2O, from MSDmotif at EBI
  • Fold representative 2o2o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o2o] [2o2o_A]
  • SWISS-PROT database: [Q96B97]
  • Domain organization of [SH3K1_HUMAN] by SWISSPFAM
  • Domain found in 2O2O: [SH3 ] by SMART
  • Other resources with information on 2O2O
  • Community annotation for 2O2O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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