2O2V Transferase date Nov 30, 2006
title Crystal Structure Of The Complex Of Human Mitogen Activated Kinase Kinase 5 Phox Domain (Map2k5-Phox) With Human Mitoge Activated Protein Kinase Kinase Kinase 3 (Map3k3b-Phox)
authors P.Filippakopoulos, P.Savitsky, E.Ugochukwu, A.Edwards, C.Arrowsm M.Sundstrom, F.Von Delft, S.Knapp, Structural Genomics Consort
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A
Fragment: Map2k5-Phox
Synonym: Map Kinase Kinase 5, Mapkk 5, Mapkerk Kinase 5
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map2k5, Mek5, Mkk5, Prkmk5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 3
Chain: B
Fragment: Map3k3b-Phox
Synonym: Mapkerk Kinase Kinase 3, Mek Kinase 3, Mekk 3
Ec: 2.7.11.25
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k3, Mapkkk3, Mekk3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 41 21 2
R_factor 0.194 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.654 87.654 55.408 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand
enzyme Transferase E.C.2.7.12.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2o2v.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2O2V
  • Likely Quarternary Molecular Structure file(s) for 2O2V
  • Structure Factors (320 Kb)
  • Retrieve 2O2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O2V from S2C, [Save to disk]
  • Re-refined 2o2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O2V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O2V, from MSDmotif at EBI
  • Fold representative 2o2v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o2v_B] [2o2v] [2o2v_A]
  • SWISS-PROT database: [Q99759] [Q13163]
  • Domain organization of [M3K3_HUMAN] [MP2K5_HUMAN] by SWISSPFAM
  • Domain found in 2O2V: [PB1 ] by SMART
  • Other resources with information on 2O2V
  • Community annotation for 2O2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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