2O2W Signaling Protein date Nov 30, 2006
title Extending Powder Diffraction To Proteins: Structure Solution Of The Second Sh3 Domain From Ponsin
authors N.Pinotsis, I.Margiolaki
compound source
Molecule: Ponsin
Chain: A
Fragment: Src Homology 3 (Sh3) Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sorbs1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151
symmetry Space Group: P 21 21 21
length a length b length c angle alpha angle beta angle gamma
24.704 36.426 72.099 90.00 90.00 90.00
method Powder Diffractionresolution
Primary referenceSecond SH3 domain of ponsin solved from powder diffraction., Margiolaki I, Wright JP, Wilmanns M, Fitch AN, Pinotsis N, J Am Chem Soc. 2007 Sep 26;129(38):11865-71. Epub 2007 Sep 5. PMID:17784760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (2o2w.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2O2W
  • Likely Quarternary Molecular Structure file(s) for 2O2W
  • Structure Factors (520 Kb)
  • Retrieve 2O2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O2W from S2C, [Save to disk]
  • View 2O2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O2W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O2W, from MSDmotif at EBI
  • Fold representative 2o2w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o2w_A] [2o2w]
  • SWISS-PROT database: [A0AED4] [Q9BX66]
  • Domain organization of [A0AED4_HUMAN] [SRBS1_HUMAN] by SWISSPFAM
  • Domain found in 2O2W: [SH3 ] by SMART
  • Other resources with information on 2O2W
  • Community annotation for 2O2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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