2O36 Hydrolase date Nov 30, 2006
title Crystal Structure Of Engineered Thimet Oligopeptidase With N Specificity In Neurotensin Cleavage Site
authors D.W.Rodgers, E.J.Lim
compound source
Molecule: Thimet Oligopeptidase
Chain: A
Synonym: Endopeptidase 24.15, Mp78
Ec: 3.4.24.15
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thop1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bl21(De3)Rp
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.120 99.250 105.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand ZN enzyme Hydrolase E.C.3.4.24.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSwapping the substrate specificities of the neuropeptidases neurolysin and thimet oligopeptidase., Lim EJ, Sampath S, Coll-Rodriguez J, Schmidt J, Ray K, Rodgers DW, J Biol Chem. 2007 Jan 24;. PMID:17251185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (2o36.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 2O36
  • CSU: Contacts of Structural Units for 2O36
  • Likely Quarternary Molecular Structure file(s) for 2O36
  • Structure Factors (677 Kb)
  • Retrieve 2O36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O36 from S2C, [Save to disk]
  • Re-refined 2o36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O36
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O36, from MSDmotif at EBI
  • Fold representative 2o36 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o36] [2o36_A]
  • SWISS-PROT database: [P52888]
  • Domain organization of [THOP1_HUMAN] by SWISSPFAM
  • Other resources with information on 2O36
  • Community annotation for 2O36 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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