2O39 Viral Protein Immune System date Dec 01, 2006
title Human Adenovirus Type 11 Knob In Complex With Domains Scr1 A Cd46 (Membrane Cofactor Protein, Mcp)
authors D.B.Persson, D.M.Reiter, N.Arnberg, T.Stehle
compound source
Molecule: Fiber Protein
Chain: A, B
Fragment: Residues 129-325
Synonym: Piv
Engineered: Yes
Organism_scientific: Human Adenovirus 11p
Organism_taxid: 343462
Strain: Slobiski
Gene: Piv
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Membrane Cofactor Protein
Chain: C, D
Fragment: Scr1 And Scr 2 Domains
Synonym: Trophoblast Leukocyte Common Antigen, Tlx, Cd46 An
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd46, Mcp
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho-Lec3281
Expression_system_cell: Cho Cell
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbj5
symmetry Space Group: P 3
R_factor 0.238 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.140 106.140 68.320 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand BMA, CA, NAG enzyme
note 2O39 (Molecule of the Month:pdb132)is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAdenovirus type 11 binding alters the conformation of its receptor CD46., Persson BD, Reiter DM, Marttila M, Mei YF, Casasnovas JM, Arnberg N, Stehle T, Nat Struct Mol Biol. 2007 Feb;14(2):164-6. Epub 2007 Jan 14. PMID:17220899
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2o39.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (2o39.pdb2.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 2O39
  • CSU: Contacts of Structural Units for 2O39
  • Likely Quarternary Molecular Structure file(s) for 2O39
  • Structure Factors (221 Kb)
  • Retrieve 2O39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O39 from S2C, [Save to disk]
  • Re-refined 2o39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O39
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O39, from MSDmotif at EBI
  • Fold representative 2o39 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o39_B] [2o39_A] [2o39] [2o39_C] [2o39_D]
  • SWISS-PROT database: [P35774] [P15529]
  • Domain organization of [FIBP_ADE1P] [MCP_HUMAN] by SWISSPFAM
  • Domain found in 2O39: [CCP ] by SMART
  • Other resources with information on 2O39
  • Community annotation for 2O39 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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