2O49 Transcription Dna date Dec 04, 2006
title Crystal Structure Of The N-Terminal Cut Domain Of Satb1 Boun Matrix Attachment Region Dna
authors K.Yamasaki, T.Akiba, K.Harata
compound source
Molecule: Dna (5'-D(Dgpdcpdtpdapdapdtpdapdtpdapdt 3');
Chain: B
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Dgpdcpdapdtpdapdtpdapdtpdtpda 3');
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: Dna-Binding Protein Satb1
Chain: A
Fragment: N-Terminal Cut Domain (Residues 368-452)
Synonym: Special At-Rich Sequence-Binding Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1
R_factor 0.212 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.659 36.997 41.248 71.60 83.92 71.07
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1., Yamasaki K, Akiba T, Yamasaki T, Harata K, Nucleic Acids Res. 2007 Jul 25;. PMID:17652321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (2o49.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2O49
  • Likely Quarternary Molecular Structure file(s) for 2O49
  • Structure Factors (410 Kb)
  • Retrieve 2O49 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O49 from S2C, [Save to disk]
  • Re-refined 2o49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O49
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O49, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o49_A] [2o49] [2o49_B] [2o49_C]
  • SWISS-PROT database: [Q01826]
  • Domain organization of [SATB1_HUMAN] by SWISSPFAM
  • Domain found in 2O49: [CUT ] by SMART
    • Other resources with information on 2O49
  • Community annotation for 2O49 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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