2O4D Unknown Function date Dec 04, 2006
title Crystal Structure Of A Hypothetical Protein From Pseudomonas Aeruginosa
authors T.E.Mcgrath, K.Battaile, G.Kisselman, V.Romanov, J.Wu-Brown, C.Vi M.Kimber, A.M.Edwards, E.F.Pai, N.Y.Chirgadze
compound source
Molecule: Hypothetical Protein Pa0269
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Strain: 633
Gene: Pa0269
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 63 2 2
R_factor 0.175 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.718 92.718 65.303 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxiredoxin activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2o4d.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 2O4D
  • CSU: Contacts of Structural Units for 2O4D
  • Likely Quarternary Molecular Structure file(s) for 2O4D
  • Structure Factors (106 Kb)
  • Retrieve 2O4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O4D from S2C, [Save to disk]
  • Re-refined 2o4d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O4D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O4D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o4d_A] [2o4d]
  • SWISS-PROT database: [Q9I6M1]
  • Domain organization of [Q9I6M1_PSEAE] by SWISSPFAM
    • Other resources with information on 2O4D
  • Community annotation for 2O4D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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