2O5J	Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analog	date
authors	Vassylyev, D.G., Vassylyeva, M.N.
compound		source
symmetry		R_factor R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.00
ligand	APC, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, K, B, L M, C N, D O, E
Primary reference	Structural basis for substrate loading in bacterial RNA polymerase., Vassylyev DG, Vassylyeva MN, Zhang J, Palangat M, Artsimovitch I, Landick R, Nature. 2007 Jun 20;. PMID:17581591

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1047 Kb) [Save to disk] Biological Unit Coordinates (2o5j.pdb1.gz) 525 Kb Biological Unit Coordinates (2o5j.pdb2.gz) 524 Kb LPC: Ligand-Protein Contacts for 2O5J CSU: Contacts of Structural Units for 2O5J Likely Quarternary Molecular Structure file(s) for 2O5J Structure Factors (2169 Kb) Retrieve 2O5J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O5J from S2C, [Save to disk] Re-refined 2o5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O5J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O5J

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2O5J, from MSDmotif at EBI Fold representative 2o5j from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o5j_Y] [2o5j_O] [2o5j_D] [2o5j_H] [2o5j_E] [2o5j_G] [2o5j_B] [2o5j_C] [2o5j_A] [2o5j_M] [2o5j_N] [2o5j_Z] [2o5j_I] [2o5j] [2o5j_L] [2o5j_X] [2o5j_K] SWISS-PROT database: [Q5SHR6] [Q8RQE9] [Q8RQE8] [Q8RQE7] Domain organization of [RPOA_THET8] [RPOB_THET8] [RPOC_THET8] [RPOZ_THET8] by SWISSPFAM Domains found in 2O5J: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

Other resources with information on 2O5J

Community annotation for 2O5J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---