2O65 Transferase date Dec 06, 2006
title Crystal Structure Of Pim1 With Pentahydroxyflavone
authors S.Holder, M.Zemskova, C.Zhang, M.Tabrizizad, R.Bremer, J.W.Neidig M.B.Lilly
compound source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi
Chain: A
Fragment: Catalytic Domain
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.208 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.652 98.652 80.472 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand IMD, MYF BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCharacterization of a potent and selective small-molecule inhibitor of the PIM1 kinase., Holder S, Zemskova M, Zhang C, Tabrizizad M, Bremer R, Neidigh JW, Lilly MB, Mol Cancer Ther. 2007 Jan;6(1):163-72. Epub 2007 Jan 11. PMID:17218638
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2o65.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2O65
  • CSU: Contacts of Structural Units for 2O65
  • Likely Quarternary Molecular Structure file(s) for 2O65
  • Retrieve 2O65 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O65 from S2C, [Save to disk]
  • View 2O65 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O65
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O65, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o65] [2o65_A]
  • SWISS-PROT database: [P11309]
  • Domain organization of [PIM1_HUMAN] by SWISSPFAM
  • Domain found in 2O65: [S_TKc ] by SMART
  • Other resources with information on 2O65
  • Community annotation for 2O65 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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