2O6E Structure of native rTp34 from Treponema pallidum from zinc-soaked crystals date
authors Machius, M., Brautigam, C.A., Deka, R.K., Tomchick, D.R., Lumpkins, S.B., Norgard, M.V.
compound source
R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand CL, EDO, SO4, ZN enzyme
Primary referenceCrystal structure of the Tp34 (TP0971) lipoprotein of treponema pallidum: implications of its metal-bound state and affinity for human lactoferrin., Deka RK, Brautigam CA, Tomson FL, Lumpkins SB, Tomchick DR, Machius M, Norgard MV, J Biol Chem. 2007 Feb 23;282(8):5944-58. Epub 2006 Dec 27. PMID:17192261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2o6e.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2O6E
  • CSU: Contacts of Structural Units for 2O6E
  • Likely Quarternary Molecular Structure file(s) for 2O6E
  • Structure Factors (408 Kb)
  • Retrieve 2O6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O6E from S2C, [Save to disk]
  • Re-refined 2o6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O6E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O6E, from MSDmotif at EBI
  • Fold representative 2o6e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o6e_B] [2o6e_A] [2o6e]
  • SWISS-PROT database: [P19478]
  • Domain organization of [TA34_TREPA] by SWISSPFAM
  • Other resources with information on 2O6E
  • Community annotation for 2O6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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