2O6K Structural Genomics, Unknown Function date Dec 07, 2006
title Crystal Structure Of Upf0346 From Staphylococcus Aureus. Nor Structural Genomics Target Zr218.
authors J.Benach, M.Abashidze, J.Seetharaman, D.Wang, Y.Fang, R.Xiao, K.Cu L.C.Ma, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Upf0346 Protein Mw1311
Chain: A, B
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 196620
Strain: Mw2
Gene: Mw1311
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.223 52.157 115.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (2o6k.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (2o6k.pdb2.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 2O6K
  • CSU: Contacts of Structural Units for 2O6K
  • Structure Factors (617 Kb)
  • Retrieve 2O6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O6K from S2C, [Save to disk]
  • Re-refined 2o6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O6K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O6K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O6K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o6k] [2o6k_A] [2o6k_B]
  • SWISS-PROT database: [Q7A0W3]
  • Domain organization of [Y1311_STAAW] by SWISSPFAM
    • Other resources with information on 2O6K
  • Community annotation for 2O6K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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