2O71 Apoptosis date Dec 09, 2006
title Crystal Structure Of Raidd Dd
authors H.Wu, H.Park
compound source
Molecule: Death Domain-Containing Protein Cradd
Chain: A
Fragment: Death Domain, Residues 95-199
Synonym: Caspase And Rip Adapter With Death Domain, Rip- Associated Protein With A Death Domain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cradd, Raidd
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 26b
symmetry Space Group: P 31 2 1
R_factor 0.231 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.058 56.058 64.915 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
note 2O71 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of RAIDD death domain implicates potential mechanism of PIDDosome assembly., Park HH, Wu H, J Mol Biol. 2006 Mar 24;357(2):358-64. Epub 2006 Jan 11. PMID:16434054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (2o71.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2O71
  • Likely Quarternary Molecular Structure file(s) for 2O71
  • Structure Factors (123 Kb)
  • Retrieve 2O71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O71 from S2C, [Save to disk]
  • Re-refined 2o71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O71
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O71, from MSDmotif at EBI
  • Fold representative 2o71 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o71_A] [2o71]
  • SWISS-PROT database: [P78560]
  • Domain organization of [CRADD_HUMAN] by SWISSPFAM
  • Domain found in 2O71: [DEATH ] by SMART
  • Other resources with information on 2O71
  • Community annotation for 2O71 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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