2O8E Dna Binding Protein Dna date Dec 12, 2006
title Human Mutsalpha (Msh2msh6) Bound To A G T Mispair, With Adp Msh2 Only
authors J.J.Warren, T.J.Pohlhaus, A.Changela, P.L.Modrich, L.S.Beese
compound source
Molecule: 5'-D(Gpapapcpcpgpcpgpgpgpcptpapgpg
Chain: E
Engineered: Yes
Mutation: Yes
Synthetic: Yes

Molecule: 5'-D(Cpcptpapgpcpcptpgpcpgpgptptpc
Chain: F
Engineered: Yes

Synthetic: Yes

Molecule: Dna Mismatch Repair Protein Msh2
Chain: A
Synonym: Muts Protein Homolog 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Msh2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfasbacdual

Molecule: Dna Mismatch Repair Protein Msh6
Chain: B
Fragment: Residues 341-1360
Synonym: Muts-Alpha 160 Kda Subunit, Gt Mismatch-Binding P Gtbp, Gtmbp, P160;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Msh6, Gtbp
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfasbacdual
symmetry Space Group: P 43 3 2
R_factor 0.253 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
257.510 257.510 257.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the Human MutSalpha DNA Lesion Recognition Complex., Warren JJ, Pohlhaus TJ, Changela A, Iyer RR, Modrich PL, Beese LS, Mol Cell. 2007 May 25;26(4):579-92. PMID:17531815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (2o8e.pdb1.gz) 287 Kb
  • LPC: Ligand-Protein Contacts for 2O8E
  • CSU: Contacts of Structural Units for 2O8E
  • Likely Quarternary Molecular Structure file(s) for 2O8E
  • Structure Factors (385 Kb)
  • Retrieve 2O8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O8E from S2C, [Save to disk]
  • Re-refined 2o8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O8E, from MSDmotif at EBI
  • Fold representative 2o8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o8e]
  • SWISS-PROT database: [P43246] [P52701]
  • Domain organization of [MSH2_HUMAN] [MSH6_HUMAN] by SWISSPFAM
  • Domains found in 2O8E: [MUTSac] [MUTSd ] by SMART
  • Other resources with information on 2O8E
  • Community annotation for 2O8E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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