2O8Y Transferase date Dec 12, 2006
title Apo Irak4 Kinase Domain
authors P.A.Boriack-Sjodin, C.Mol
compound source
Molecule: Interleukin-1 Receptor-Associated Kinase 4
Chain: A, B
Fragment: Irak4 Kinase Domain
Synonym: Irak-4, Ny- Ren-64 Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Irak4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Virus
Expression_system_plasmid: Pfastbac Hta
symmetry Space Group: I 2 2 2
R_factor 0.244 R_Free 0.289
length a length b length c angle alpha angle beta angle gamma
90.150 118.640 140.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE, TPO enzyme Transferase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2o8y.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2o8y.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2O8Y
  • CSU: Contacts of Structural Units for 2O8Y
  • Likely Quarternary Molecular Structure file(s) for 2O8Y
  • Structure Factors (607 Kb)
  • Retrieve 2O8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O8Y from S2C, [Save to disk]
  • Re-refined 2o8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2O8Y, from MSDmotif at EBI
  • Fold representative 2o8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o8y_A] [2o8y_B] [2o8y]
  • SWISS-PROT database: [Q9NWZ3]
  • Domain organization of [IRAK4_HUMAN] by SWISSPFAM
  • Domain found in 2O8Y: [STYKc ] by SMART
  • Other resources with information on 2O8Y
  • Community annotation for 2O8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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