2O93 Transcription Dna date Dec 13, 2006
title Crystal Structure Of Nfat Bound To The Hiv-1 Ltr Tandem Kapp Enhancer Element
authors D.L.Bates, L.Chen
compound source
Molecule: Kappab Enhancer Element, Dna 25-Mer
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Kappab Enhancer Element, Dna 25-Mer
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Actor Of Activated T-Cells, Cytoplasmic 2
Chain: L, M, O
Fragment: Rhr Domain
Synonym: T Cell Transcription Factor Nfat1; Nfat Pre-Existi Subunit; Nf-Atp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfatc2, Nfat1, Nfatp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.691 95.299 159.227 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
Gene
Ontology
ChainFunctionProcessComponent
O, M, L


Primary referenceCrystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element., Bates DL, Barthel KK, Wu Y, Kalhor R, Stroud JC, Giffin MJ, Chen L, Structure. 2008 May;16(5):684-94. PMID:18462673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2o93.pdb1.gz) 157 Kb
  • CSU: Contacts of Structural Units for 2O93
  • Likely Quarternary Molecular Structure file(s) for 2O93
  • Structure Factors (377 Kb)
  • Retrieve 2O93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O93 from S2C, [Save to disk]
  • Re-refined 2o93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O93
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O93, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o93_A] [2o93] [2o93_O] [2o93_L] [2o93_M] [2o93_B]
  • SWISS-PROT database: [Q13469]
  • Domain organization of [NFAC2_HUMAN] by SWISSPFAM
  • Domain found in 2O93: [IPT ] by SMART
    • Other resources with information on 2O93
  • Community annotation for 2O93 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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