2O9L Rna Polymerase Sigma Factor Rpon Dna date Dec 13, 2006
title Amber Refined Nmr Structure Of The Sigma-54 Rpon Domain Boun 24 Promoter Element
authors M.Doucleff, J.G.Pelton, P.S.Lee, D.E.Wemmer
compound source
Molecule: 5'-D(Tptptptpgpgpcpapcpgptptptpc)-3
Chain: B
Engineered: Yes
Other_details: Nirb Sigma-54 Binding Site Non-Template Stra
Synthetic: Yes

Molecule: 5'-D(Gpapapapcpgptpgpcpcpapapapa)-3
Chain: C
Engineered: Yes
Other_details: Nirb Sigma-54 Binding Site Non-Template Stra

Synthetic: Yes

Molecule: Rna Polymerase Sigma Factor Rpon
Chain: A
Fragment: C-Terminal Domain
Engineered: Yes

Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Gene: Rpon
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) With Rosetta.Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pskb3
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of DNA recognition by the alternative sigma-factor, sigma54., Doucleff M, Pelton JG, Lee PS, Nixon BT, Wemmer DE, J Mol Biol. 2007 Jun 15;369(4):1070-8. Epub 2007 Apr 12. PMID:17481658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (574 Kb) [Save to disk]
  • Biological Unit Coordinates (2o9l.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2O9L
  • Original NMR restraints for 2O9L from PDB
  • Retrieve 2O9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O9L from S2C, [Save to disk]
  • View 2O9L in 3D
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  • Visual 3D analysis of 2O9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O9L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o9l_B] [2o9l] [2o9l_C] [2o9l_A]
  • SWISS-PROT database: [O66858]
  • Domain organization of [O66858_AQUAE] by SWISSPFAM
  • Other resources with information on 2O9L
  • Community annotation for 2O9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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