2OBH Cell Cycle date Dec 19, 2006
title Centrin-Xpc Peptide
authors J.B.Charbonnier
compound source
Molecule: Centrin-2
Chain: A, B
Fragment: Hscen2 ( Residues: 26-168)
Synonym: Caltractin Isoform 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cetn2, Calt, Cen2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a(+)

Molecule: Dna-Repair Protein Complementing Xp-C Cells
Chain: C, D
Fragment: Xpc Fragment (Residues: 847-863)
Synonym: Xeroderma Pigmentosum Group C-Complementing Protei
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs In Homo Sapiens
symmetry Space Group: C 1 2 1
R_factor 0.201 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.278 59.419 105.137 90.00 94.67 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACE, CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural, thermodynamic, and cellular characterization of human centrin 2 interaction with xeroderma pigmentosum group C protein., Charbonnier JB, Renaud E, Miron S, Le Du MH, Blouquit Y, Duchambon P, Christova P, Shosheva A, Rose T, Angulo JF, Craescu CT, J Mol Biol. 2007 Nov 2;373(4):1032-46. Epub 2007 Aug 25. PMID:17897675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2obh.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2OBH
  • CSU: Contacts of Structural Units for 2OBH
  • Likely Quarternary Molecular Structure file(s) for 2OBH
  • Structure Factors (318 Kb)
  • Retrieve 2OBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OBH from S2C, [Save to disk]
  • Re-refined 2obh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OBH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OBH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2obh] [2obh_A] [2obh_C] [2obh_D] [2obh_B]
  • SWISS-PROT database: [P41208] [Q01831]
  • Domain organization of [CETN2_HUMAN] [XPC_HUMAN] by SWISSPFAM
  • Domain found in 2OBH: [EFh ] by SMART
  • Other resources with information on 2OBH
  • Community annotation for 2OBH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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