2OBY Oxidoreductase date Dec 20, 2006
title Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp5
authors S.Porte, E.Valencia, J.Farres, I.Fita, A.C.W.Pike, N.Shafqat, J.De C.Johansson, A.Haroniti, O.Gileadi, C.H.Arrowsmith, A.Edwards, J M.Sundstrom, F.Von Delft, U.Oppermann, X.Pares
compound source
Molecule: Putative Quinone Oxidoreductase
Chain: A, B, C, D, E
Synonym: Tumor Protein P53- Inducible Protein 3, P53-Induce 3;
Ec: 1.-.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tp53i3, Pig3
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-2
symmetry Space Group: C 2 2 21
R_factor 0.220 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.354 184.359 318.047 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand NAP enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (2oby.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (2oby.pdb2.gz) 98 Kb
  • Biological Unit Coordinates (2oby.pdb3.gz) 99 Kb
  • Biological Unit Coordinates (2oby.pdb4.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 2OBY
  • CSU: Contacts of Structural Units for 2OBY
  • Likely Quarternary Molecular Structure file(s) for 2OBY
  • Structure Factors (580 Kb)
  • Retrieve 2OBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OBY from S2C, [Save to disk]
  • Re-refined 2oby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OBY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OBY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oby_A] [2oby_C] [2oby_D] [2oby_E] [2oby_B] [2oby]
  • SWISS-PROT database: [Q53FA7]
  • Domain organization of [QORX_HUMAN] by SWISSPFAM
    • Other resources with information on 2OBY
  • Community annotation for 2OBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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