2OC3 Hydrolase date Dec 20, 2006
title Crystal Structure Of The Catalytic Domain Of Human Protein T Phosphatase Non-Receptor Type 18
authors E.Ugochukwu, A.Barr, I.Alfano, F.Gorrec, C.Umeano, P.Savitsky, F.S J.Eswaran, E.Papagrigoriou, J.E.Debreczeni, A.Turnbull, G.Bunko M.Sundstrom, C.H.Arrowsmith, J.Weigelt, A.Edwards, F.Von Delft, Structural Genomics Consortium (Sgc)
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 18
Chain: A
Synonym: Brain-Derived Phosphatase
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn18
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Phage Resistant
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p2
symmetry Space Group: P 1 21 1
R_factor 0.154 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.338 63.763 48.992 90.00 102.64 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2oc3.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 2OC3
  • Likely Quarternary Molecular Structure file(s) for 2OC3
  • Structure Factors (635 Kb)
  • Retrieve 2OC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OC3 from S2C, [Save to disk]
  • Re-refined 2oc3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OC3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OC3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m2oc3, region C:120-390 [Jmol] [rasmolscript] [script source]
  • Fold representative 2oc3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oc3_A] [2oc3]
  • SWISS-PROT database: [Q99952]
  • Domain organization of [PTN18_HUMAN] by SWISSPFAM
  • Domain found in 2OC3: [PTPc ] by SMART
  • Other resources with information on 2OC3
  • Community annotation for 2OC3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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