2OCC Oxidoreductase date May 26, 1998
title Bovine Heart Cytochrome C Oxidase At The Fully Oxidized Stat
authors T.Tsukihara, M.Yao
compound source
Molecule: Cytochrome C Oxidase
Chain: A, N
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: B, O
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: C, P
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: D, Q
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: E, R
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: F, S
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: G, T
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: H, U
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: I, V
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: J, W
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: K, X
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: L, Y
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion

Molecule: Cytochrome C Oxidase
Chain: M, Z
Synonym: Ferrocytochrome C\:Oxygen Oxidoreductase
Ec: 1.9.3.1
Other_details: This Enzyme Is A Hybrid Protein Complex And Homodimer. One Monomer Is Composed Of 13 Different Subunits Metal Centers, Heme A, Heme A3, Cua, Cub, Mg, Na And Zn.
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Heart Muscle
Organelle: Mitochondrion
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.100 210.500 178.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CU, HEA, MG, NA, PER, ZN enzyme Oxidoreductase E.C.1.9.3.1 BRENDA
related structures by homologous chain: 1OCR, 1V55
Gene
Ontology
ChainFunctionProcessComponent
C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • E, R


    H, U


    J, W


    K, X


    N, A


    O, B
  • cytochrome-c oxidase activit...


    • Q, D


    S, F


    T, G


    V, I
  • cytochrome-c oxidase activit...


    • Y, L


    Z, M


    Primary referenceRedox-coupled crystal structural changes in bovine heart cytochrome c oxidase., Yoshikawa S, Shinzawa-Itoh K, Nakashima R, Yaono R, Yamashita E, Inoue N, Yao M, Fei MJ, Libeu CP, Mizushima T, Yamaguchi H, Tomizaki T, Tsukihara T, Science 1998 Jun 12;280(5370):1723-9. PMID:9624044
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (583 Kb) [Save to disk]
  • Biological Unit Coordinates (2occ.pdb1.gz) 290 Kb
  • Biological Unit Coordinates (2occ.pdb2.gz) 290 Kb
  • Biological Unit Coordinates (2occ.pdb3.gz) 572 Kb
  • LPC: Ligand-Protein Contacts for 2OCC
  • CSU: Contacts of Structural Units for 2OCC
  • Likely Quarternary Molecular Structure file(s) for 2OCC
  • Retrieve 2OCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OCC from S2C, [Save to disk]
    • View 2OCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OCC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OCC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2occa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2occb2, region B:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d2occb1, region B:91-227 [Jmol] [rasmolscript] [script source]
        - Domain d2occc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2occd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d2occe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d2occf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d2occg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d2occh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d2occi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d2occj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d2occk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d2occl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d2occm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d2occn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d2occo2, region O:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d2occo1, region O:91-227 [Jmol] [rasmolscript] [script source]
        - Domain d2occp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d2occq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d2occr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d2occs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d2occt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d2occu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d2occv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d2occw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d2occx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d2occy_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d2occz_, region Z [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2occ_G] [2occ_F] [2occ_I] [2occ_V] [2occ_P] [2occ_H] [2occ_W] [2occ_U] [2occ_S] [2occ_E] [2occ_J] [2occ_T] [2occ_Z] [2occ_X] [2occ_O] [2occ_D] [2occ_B] [2occ_C] [2occ_K] [2occ_L] [2occ] [2occ_Y] [2occ_N] [2occ_M] [2occ_Q] [2occ_R] [2occ_A]
  • SWISS-PROT database: [P00396] [P68530] [P00415] [P00423] [P00426] [P00428] [P04038] [P13183] [P00430] [P10175] [P07471] [P00429] [P07470]
  • Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.
  • Domain organization of [COX1_BOVIN] [COX2_BOVIN] [COX3_BOVIN] [COX41_BOVIN] [COX5A_BOVIN] [COX5B_BOVIN] [COX6C_BOVIN] [COX7B_BOVIN] [COX7C_BOVIN] [COX8B_BOVIN] [CX6A2_BOVIN] [CX6B1_BOVIN] [CX7A1_BOVIN] by SWISSPFAM
    • Other resources with information on 2OCC
  • Community annotation for 2OCC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2OCC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science