2ODB Protein Binding date Dec 22, 2006
title The Crystal Structure Of Human Cdc42 In Complex With The Cri Of Human P21-Activated Kinase 6 (Pak6)
authors E.Ugochukwu, X.Yang, J.Elkins, M.Soundararajan, A.C.W.Pike, J.Esw N.Burgess, J.E.Debreczeni, M.Sundstrom, C.Arrowsmith, J.Weigelt A.Edwards, O.Gileadi, F.Von Delft, S.Knapp, D.Doyle, Structural Consortium (Sgc)
compound source
Molecule: Human Cell Division Cycle 42 (Cdc42)
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc42
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4

Molecule: Serinethreonine-Protein Kinase Pak 6
Chain: B
Fragment: Pak6 Crib Domain
Synonym: P21-Activated Kinase 6, Pak-6
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 65 2 2
R_factor 0.203 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.366 162.366 45.968 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, GCP, MG, SO4 enzyme
note 2ODB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquitin protein ligase act...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2odb.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (2odb.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (2odb.pdb3.gz) 68 Kb
  • Biological Unit Coordinates (2odb.pdb4.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2ODB
  • CSU: Contacts of Structural Units for 2ODB
  • Likely Quarternary Molecular Structure file(s) for 2ODB
  • Structure Factors (211 Kb)
  • Retrieve 2ODB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ODB from S2C, [Save to disk]
  • Re-refined 2odb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ODB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ODB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ODB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2odb_B] [2odb] [2odb_A]
  • SWISS-PROT database: [P60953] [Q9NQU5]
  • Domain organization of [CDC42_HUMAN] [PAK6_HUMAN] by SWISSPFAM
  • Domains found in 2ODB: [PBD] [RHO ] by SMART
    • Other resources with information on 2ODB
  • Community annotation for 2ODB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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