2ODG Membrane Protein, Protein Binding date Dec 22, 2006
title Complex Of Barrier-To-Autointegration Factor And Lem-Domain Of Emerin
authors G.M.Clore, M.Cai
compound source
Molecule: Barrier-To-Autointegration Factor
Chain: A, B
Fragment: Residues 1-89
Synonym: Breakpoint Cluster Region Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Nucleus
Gene: Banf1, Baf, Bcrg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Emerin
Chain: C
Fragment: Residues 2-47
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Nucleus
Gene: Emd, Edmd, Sta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


Primary referenceSolution NMR Structure of the Barrier-to-Autointegration Factor-Emerin Complex., Cai M, Huang Y, Suh JY, Louis JM, Ghirlando R, Craigie R, Clore GM, J Biol Chem. 2007 May 11;282(19):14525-35. Epub 2007 Mar 13. PMID:17355960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2ODG
  • Original NMR restraints for 2ODG from PDB
  • Retrieve 2ODG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ODG from S2C, [Save to disk]
  • View 2ODG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ODG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ODG, from MSDmotif at EBI
  • Fold representative 2odg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2odg_C] [2odg] [2odg_B] [2odg_A]
  • SWISS-PROT database: [O75531] [P50402]
  • Domain organization of [BAF_HUMAN] [EMD_HUMAN] by SWISSPFAM
  • Domains found in 2ODG: [BAF] [LEM ] by SMART
  • Other resources with information on 2ODG
  • Community annotation for 2ODG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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