2OEI Protein Binding date Dec 29, 2006
title Crystal Structure Of Human Fe65-Ww Domain In Complex With Hu Peptide
authors M.Meiyappan, G.Birrane, J.A.A.Ladias
compound source
Molecule: Amyloid Beta A4 Protein-Binding Family B Member 1
Chain: A
Fragment: Ww Domain (Residues 253-289)
Synonym: Fe65 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apbb1, Fe65
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kt

Molecule: Poly-Proline Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Can Be Naturally Found In Homo Sapiens (Huma
symmetry Space Group: P 41 21 2
R_factor 0.192 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.436 36.436 78.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Polyproline Recognition by the FE65 WW Domain., Meiyappan M, Birrane G, Ladias JA, J Mol Biol. 2007 Sep 28;372(4):970-80. Epub 2007 Jun 29. PMID:17686488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (2oei.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2OEI
  • Likely Quarternary Molecular Structure file(s) for 2OEI
  • Structure Factors (159 Kb)
  • Retrieve 2OEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OEI from S2C, [Save to disk]
  • Re-refined 2oei structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OEI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OEI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oei] [2oei_B] [2oei_A]
  • SWISS-PROT database: [O00213]
  • Domain organization of [APBB1_HUMAN] by SWISSPFAM
  • Domain found in 2OEI: [WW ] by SMART
    • Other resources with information on 2OEI
  • Community annotation for 2OEI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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